Publications

Digital PCR quantification of ultrahigh ERBB2 copy number identifies poor breast cancer survival after trastuzumab.
npj Breast Cancer, 2024. 10:14

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Preoperative ctDNA Levels are Associated with Poor Overall Survival in Patients with Ovarian Cancer.
Cancer Genomics & Proteomics, 2023. 20(6suppl):763-770

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805P Tumor-informed ctDNA detection as a predictive marker for postoperative residual disease in epithelial ovarian cancer: A feasibility study.
Annals of Oncology, 2023. 34:S536, Supplement 2

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#898 Tumor-informed ctDNA detection as a marker for postoperative residual disease in epithelial ovarian cancer – results of a feasibility study.
International Journal of Gynecologic Cancer, 2023. 33:A38-A39

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Abstract 5710: Detection and monitoring of t(11;14) in liquid biopsies from patients with relapsed/refractory multiple myeloma treated with venetoclax-based regimens.
Cancer Research, 2023. 83:7_Supplement

DOI

2022-RA-627-ESGO: Preoperative circulating tumor DNA level is associated to poor overall survival in patients with ovarian cancer.
International Journal of Gynecologic Cancer, 2022. 32:A405

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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.
Cell Genomics, 2022. 2(5): 100129

DOI PDF bioRxiv Preprint Project

Molecular and Serologic Diagnostic Technologies for SARS-CoV-2.
arXiv, 2022

DOI arXiv Preprint Project

Clinical associations of ESR2 (estrogen receptor beta; ERβ) expression across thousands of primary breast tumors.
Scientific Reports, 2022. 12:4696

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Identification and Development of Therapeutics for COVID-19.
mSystems, 2021. 6(6): e00233-21

DOI PDF arXiv Preprint Project

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure.
mSystems, 2021. 6(5): e00095-21

DOI PDF arXiv Preprint Project

Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention and Treatment.
mSystems, 2021. 6(3): e00122-21

DOI PDF arXiv Preprint Project

Preexisting Somatic Mutations of Estrogen Receptor Alpha (ESR1) in Early-Stage Primary Breast Cancer.
JNCI Cancer Spectrum, 2021. 5(2): pkab028

DOI PDF Dataset Press Release

RNA Sequencing for Molecular Diagnostics in Breast Cancer.
Lund University, Faculty of Medicine Doctoral Dissertation Series. 2021:2

PDF Code PhD Project LUCRIS Project

The mutational landscape of the SCAN-B real-world primary breast cancer transcriptome.
EMBO Molecular Medicine, 2020. 12(10):e12118

DOI PDF bioRxiv Preprint Code Dataset Press Release PhD Project

Features of increased malignancy in eosinophilic clear cell renal cell carcinoma.
The Journal of Pathology, 2020. 252(4):384–397

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Abstract CT074: Pre-existing ESR1 mutations in early-stage primary breast cancer predict failure of endocrine therapy and poor survival.
Cancer Research, 2020. 80:16_Supplement

DOI

A crowdsourced set of curated structural variants for the human genome.
PLoS Computational Biology, 2020. 16(6):e1007933

DOI PDF bioRxiv Preprint Code

Defining the mutational landscape of 3,217 primary breast cancer transcriptomes through large-scale RNA-seq within the Sweden Cancerome Analysis Network: Breast Project (SCAN-B; NCT03430492).
Journal of Clinical Oncology, 2020. 38:15_suppl

DOI

Plasma circulating tumor DNA as a genomic biomarker for ovarian cancer.
European Journal of Human Genetics, 2019. 27:1670-1671

Detection of circulating tumor cells and circulating tumor DNA before and after mammographic breast compression in a cohort of breast cancer patients scheduled for neoadjuvant treatment.
Breast Cancer Research and Treatment, 2019. 177(2):447–445

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Bioconda: sustainable and comprehensive software distribution for the life sciences.
Nature Methods, 2018. 15(7):475–476

DOI bioRxiv Preprint Project Code

Clinical Value of RNA Sequencing-Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network–Breast Initiative.
JCO Precision Oncology, 2018. 2:1–18

DOI PDF Dataset PhD Project

Abstract P4-09-03: On the development and clinical value of RNA-sequencing-based classifiers for prediction of the five conventional breast cancer biomarkers: A report from the population-based multicenter SCAN-B study.
Cancer Research, 2018. 78:4_Supplement P4-09-03

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Abstract P2-02-09: Breast cancer subtype distribution and circulating tumor DNA in response to neoadjuvant chemotherapy: Experiences from a preoperative cohort within SCAN-B.
Cancer Research, 2018. 78:4_Supplement P2-02-09

DOI

TopHat-Recondition: A post-processor for TopHat unmapped reads.
BMC Bioinformatics, 2016. 17(1):199

DOI PDF bioRxiv Preprint Code PhD Project

Remarkable similarities of chromosomal rearrangements between primary human breast cancers and matched distant metastases as revealed by whole-genome sequencing.
Oncotarget, 2015. 6(35):37169–37184

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Contralateral breast cancer can represent a metastatic spread of the first primary tumor: determination of clonal relationship between contralateral breast cancers using next-generation whole genome sequencing.
Breast Cancer Research, 2015. 17:102

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Abstract 4805: Whole genome sequencing of primary breast cancers and matched distant metastases.
Cancer Research, 2015. 75:15_Supplement 4805

DOI

The Sweden Cancerome Analysis Network-Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine.
Genome Medicine, 2015. 7(1):20

DOI PDF Dataset PhD Project

FreeBSD Security Event Auditing.
BSD Magazine issue 4/2009

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